PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g21770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 234aa    MW: 25910.4 Da    PI: 4.6765
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g21770genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-06443538
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ +e+ +++  C  ++  lC++C  e H        H+
  CA06g21770  4 QCDVCEKAQATVICCADEAALCAKCDIEVHAAnklaskHQ 43
                7******99*********************6566666665 PP

2zf-B_box28.53.1e-095395238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                + + C+ +++k + +fC +++ l+C+dC +++H+       H+
  CA06g21770 53 KLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSAsslaknHQ 95
                6789*****************************6556666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527147IPR000315B-box-type zinc finger
CDDcd000211.33E-5345No hitNo description
SMARTSM003365.4E-7447IPR000315B-box-type zinc finger
SMARTSM003361.4E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3285299IPR000315B-box-type zinc finger
PfamPF006431.5E-75395IPR000315B-box-type zinc finger
CDDcd000216.07E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKIQCDVCEK AQATVICCAD EAALCAKCDI EVHAANKLAS KHQRLHLQCL SNKLPPCDIC  60
QDKAAFIFCV EDRALFCKDC DEAIHSASSL AKNHQRFLAT GIRVALSSSC NKDAVKSQLE  120
PQPPQQNTQQ VGLKMPPQQL SSITSPSWPV DDLLGFPDYE SSDKKELLEL GEFEWLGGID  180
LFGEQTAAEV PELSAPQSNN TNIYRPTKYN MPYKKLRIEM PDEDEYFTVP DLG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2999010.0DQ299901.1 Solanum sogarandinum zinc finger B-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578085.11e-173PREDICTED: B-box zinc finger protein 24-like
SwissprotQ9SID12e-90BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A0V0HYM11e-157A0A0V0HYM1_SOLCH; Putative fructokinase 2-like
STRINGPGSC0003DMT4000694981e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54102233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.15e-85DBB family protein